# G-HIV

**Repository Path**: sculab/G-HIV

## Basic Information

- **Project Name**: G-HIV
- **Description**: No description available
- **Primary Language**: Visual Basic
- **License**: MIT
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2025-07-24
- **Last Updated**: 2025-07-25

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

# G-HIV

**G-HIV** is a graphical toolkit for HIV analysis with long‑read sequencing data. It empowers researchers and field epidemiologists with one-click HIV sequence analysis on Windows computers. The workflow includes:

- Long read demultiplexer for Geneus G-seq500™ sequencer
- Reconstruction of per-sample HIV genomes
- Discovery and resolution of intra-host quasi-species
- Typing and subtyping of HIV quasi-species
- Detection and interpretation of drug resistance mutations
- Haplotype network visualization from resolved quasi-species

![G-HIV Pipeline Illustration](GHIV.jpg)

## Citations

The paper for G-HIV is not yet published. Please cite these dependencies when using G-HIV:

Chi L, Zhang X, Xue Y, Chen H. 2023. fastHaN: a fast and scalable program for constructing haplotype network for large‐sample sequences. Molecular Ecology Resources:1755-0998.13829.

Múrias Dos Santos A, Cabezas MP, Tavares AI, Xavier R, Branco M. 2016. tcsBU: a tool to extend TCS network layout and visualization. Bioinformatics 32:627–628.

## Documentation

For detailed instructions, please consult the [User Manual](G-HIV%20Manual.pdf).